species:   Artha
pid:       MI0014667
parent:    ath-MIR3434
paralog:   
locus:     5:7583055-7583403
matures:   ['ACUUGGCUGAUUCUAUUAUU', 'UCAGAGUAUCAGCCAUGUGA']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 5:7583055-7583403

0 out of bounds
26 alignments
26 proper strand
23 stranded perfect matches

                                                                             **********************                                                                                                                                                       **********************                                                                             
AAAUUCCUUAUAUUGCAGAUAACACCUUAAGGAAGGUUUGUUUUUGUUUUACAGGUUAACUGUGGUGGUAAAUUUUAUCACUUGGCUGAUUCUAUUAUUUUGAGCAAGGCUUCCUAAAGUCAGAUCAUUGGUCUCUCUCUCAAGUAACUUAGGUUUGAAAAAGCAGCUUCUCCAGUCAGCAUCUUACCCUUCUCACUACUCAGCAAAUCCACAAAUAGAAACGAGUCGUUGCUUCGGAAGCCUUGUUCAAAAUCAGAGUAUCAGCCAUGUGAUAAAAUUAACAACCAGAGUUAACAUAUAAAACUAAAACAAUCCUUCCUUAAGUUGUUGUUGCUUAAUUUGGGAAUUU
((((((((......(((.((((((.(((((((((((.(((((((.((((((...(((((((.((((.((.(((((((((((.((((((((.((...((((((((((((((((((.....(((((((...(((..((......))..)))..)))))))..(((((((..(((...((........................................))...)))..))))))).))))))))))))))))))...)).)))))))).))))))))))).)).)))).)))))))...)))))).))))))).))))))))))).))))))))).......))))))))
-------------------------------------------------------------------------------ACUUGGCUGAUUCUAUUAUU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=8 c
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCAGAGUAUCAGCCAUGUGA----------------------------------------------------------------------------- l=20 a=1 c*
-------------------------------------------------------------------------------ACUUGGCUGAUUCUAUUAUU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=8 ma
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCAGAGUAUCAGCCAUGUGA----------------------------------------------------------------------------- l=20 a=1 ma*

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCAGAGUAUCAGCCAUGUGA----------------------------------------------------------------------------- l=20 a=1 (c*,ma*)
---------------------------------------------------------------------------------UUGGCUGAUUCUAUUAUUUUG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-------------------------------------------------------------------------------ACUUGGCUGAUUCUAUUAUc---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
-------------------------------------------------------------------------------ACUUGGCUGAUUCUAUUAUU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=8 (c,ma)
-------------------------------------------------------------------------------gCUUGGCUGAUUCUAUUAUU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
-------------------------------------------------------------------------------ACUUGGaUGAUUCUAUUAUU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
-------------------------------------------------------------------------------ACUUGGCUGAUUCUAUUAUUU--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------UCACUUGGCUGAUUCUAUUAUUUUG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=25 a=1 
-------------------------------------------------------UUAACUGUGGUGGUAAAUUUUAUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=24 a=1 
------------------------------------------------------GUUAACUGUGGUGGUAAAUUUUAUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=25 a=2 
-----------------------------------------------------GGUUAACUGUGGUGGUAAAUUUUAUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=26 a=8 

mb-01011
ax-1110011
ku-01
ss-101101111101
fn-111
